223 publications

Frequency-Domain Better than Time-Domain for Causal Structure Recovery in Dynamical Systems on Networks

Mohammed Tuhin Rana, Mishfad Shaikh Veedu, James Melbourne, Murti Salapaka

International Conference on Learning Representations (ICLR)

GenUnfold: Rapidly Predict Protein Mechanical Unfolding Trajectory via a Physics-Guided Diffusion Model

Zhang, Yiyuan; Hua, Cailong; Singh, Vinitendra; Muretta, Joseph M.; Ervasti, James M.; Salapaka, Murti V.

Proceedings of the 43rd International Conference on Machine Learning (ICML), PMLR 306, Seoul, South Korea (2026).

Multiple modes of AFM reveal distinct mechanical properties for dystrophin and utrophin not manifest by small fragments

Hua, Cailong; Vavra, Joseph; Powers, Jacob; Muretta, Joseph M.; Ervasti, James M.; Salapaka, Murti V.

Proceedings of the National Academy of Sciences 123, no. 3 (2026): e2511722123.

Quantifying errors in the Jarzynski estimator

Sivaraman Rajaganapathy, Cailong Hua, and Murti Salapaka

Physical Review E, Feb 2026

Topology Change Estimation in Power Distribution Networks: A Machine Learning Approach

Dey, Arnab; Chakraborty, Soham; Salapaka, Murti V.

IEEE Transactions on Smart Grid 17, no. 4 (July 2026): 3445.

A Physics-Augmented Deep Learning Framework for Classifying Single Molecule Force Spectroscopy Data

Hua, Cailong; Rajaganapathy, Sivaraman; Slick, Rebecca A.; Vavra, Joseph; Muretta, Joseph M.; Ervasti, James M.; Salapaka, Murti V.

Proceedings of Machine Learning Research (PMLR) 267 (2025): 24950–24974.

Abstract Wed051: Microtubule Reorganization in Response to Vasoconstrictive Peptides Limits Kinesin-based Transport of the T-tubule Anchoring Protein

P Silva Ortiz, A Ogren, M McClellan, C Hua, L Hartweck, M Salapaka, K Prins, M Gardner

Circulation Research, 2025

Learning Topology of Meshed Microgrids Using Voltage Magnitude.

Mohammed Tuhin Rana, and Murti V. Salapaka.

2025 IEEE Energy Conversion Conference Congress and Exposition (ECCE). IEEE

Orientation control of optically trapped micro-rods using iterative learning control.

Edlund, Connor, and Murti V. Salapaka.

Optics Express 33.19 (2025): 40191-40207.

Reconstruction of Dynamic Networks with Cycles Using Partial Ancestral Graphs and Properties of Wiener Filters.

Mohammed Tuhin Rana, and Murti V. Salapaka.

64th IEEE Conference on Decision and Control

Risk Sharing Among Microgrids: Connectivity Requirements and Optimal Control.

Arnab Dey, Vivek Khatana, Ankur Mani and Murti V. Salapaka.

61st Allerton Conference on Communication, Control, and Computing Proceedings

A Distributed Malicious Agent Detection Scheme for Resilient Power Apportioning in Microgrids,

V. Khatana, S. Chakraborty, G. Saraswat, S. Patel and M. V. Salapaka

IECON 2024 - 50th Annual Conference of the IEEE Industrial Electronics Society, Chicago, IL, USA

A Plug and Play Distributed Secondary Controller for Microgrids with Grid-Forming Inverters,

V. Khatana, S. Chakraborty and M. V. Salapaka

IECON 2024 - 50th Annual Conference of the IEEE Industrial Electronics Society, Chicago, IL, USA

Assessing Mechanical Properties of a Utrophin Fragment with Two Operational Modes.

Hua, Cailong; Salapaka, Murti

Bulletin of the American Physical Society (2024).

Distributed Difference of Convex Optimization,

V. Khatana and M. V. Salapaka

2024 60th Annual Allerton Conference on Communication, Control, and Computing, Urbana, IL, USA

Guaranteeing Service in Connected Microgrids: Storage Planning and Optimal Power Sharing Policy,

A. Dey, V. Khatana, A. Mani and M. V. Salapaka

2024 American Control Conference (ACC), Toronto, ON, Canada

Information theoretically optimal sample complexity of learning dynamical directed acyclic graphs.

Mishfad Shaikh Veedu, Deepjyoti Deka, and Murti Salapaka.

International Conference on Artificial Intelligence and Statistics

Output Impedance Shaping of GFM Inverters Using Robust H∞ 2-DOF Controllers,

Bijit Kumar Dey, Deepak Ramasubramanian, Sairaj Dhople and Murti Salapaka

2024 IEEE Energy Conversion Congress & Expo (ECCE), Phoenix, AZ, USA

PWM Inverter Based Active Filter for High Frequency AC Systems in Space Applications

Rana, M. Tuhin; Mazumder, S.; Chakraborty, Soham; Salapaka, Murti V.; Basu, Kaushik

2024 IEEE International Telecommunications Energy Conference (INTELEC): 1–6.

Causal Discovery in Electronic Circuits and Its Application in Fault Diagnosis,

M. T. Rana, S. Chakraborty and M. V. Salapaka

2023 62nd IEEE Conference on Decision and Control (CDC), Singapore, Singapore

Convex Decreasing Algorithms: Distributed Synthesis and Finite-Time Termination in Higher Dimension,

J. Melbourne, G. Saraswat, V. Khatana, S. Patel and M. V. Salapaka

in IEEE Transactions on Automatic Control, doi: 10.1109/TAC.2023.3344721.

Emergency Power Supply System for Critical Infrastructures: Design and Large Scale Hardware Demonstration.

Chakraborty, Soham, Jaesang Park, Govind Saraswat, Toby Meyers, Jing Wang, Soumya Tiwari, Vivek Khatana, Atif Maqsood, Apurva Somani, and Murti V. Salapaka.

IEEE Access (2023).

Evaluation of Distributed Power Apportioning with Net Load Management Engine in Microgrids using Power Hardware-in-the-loop Simulation.

Chakraborty, Soham, Govind Saraswat, Nischal Guruwacharya, Arnab Dey, Richard Bryce, and Murti V. Salapaka.

In 2023 North American Power Symposium (NAPS)

GradConsensus: Linearly Convergent Algorithm for Reducing Disagreement in Multi-Agent Optimization,

V. Khatana, G. Saraswat, S. Patel and M. V. Salapaka

in IEEE Transactions on Network Science and Engineering

Noise Resilient Distributed Average Consensus Over Directed Graphs,

V. Khatana and M. V. Salapaka

in IEEE Transactions on Signal and Information Processing over Networks

Phosphorylation alters the mechanical stiffness of a model fragment of the dystrophin homologue utrophin.

Ramirez, Maria Paz, Sivaraman Rajaganapathy, Anthony R. Hagerty, Cailong Hua, Gloria C. Baxter, Joseph Vavra, Wendy R. Gordon, Joseph M. Muretta, Murti V. Salapaka, and James M. Ervasti.

Journal of Biological Chemistry 299

Reinforcement Learning-based Electricity Market Vulnerability Analysis under Cyber-Topology Attack

A. Dey and M. V. Salapaka

in 2023 IEEE Power & Energy Society Innovative Smart Grid Technologies Conference (ISGT)

Scalable hybrid classification-regression solution for high-frequency nonintrusive load monitoring.

Saraswat, Govind, Blake Lundstrom, and Murti V. Salapaka.

2023 IEEE Power & Energy Society Innovative Smart Grid Technologies Conference (ISGT). IEEE

Seamless Transition of Critical Infrastructures using Droop Controlled Grid-forming Inverters,

S. Chakraborty, S. Patel, G. Saraswat, A. Maqsood and M. V. Salapaka

in IEEE Transactions on Industrial Electronics, doi: 10.1109/TIE.2023.3253946.

Topology identification under spatially correlated noise.

Veedu, Mishfad Shaikh, and Murti V. Salapaka.

Automatica 156 (2023): 111182.

Active Synchronization of Islanded Microgrid using Droop-controlled Grid-forming Inverters,

S. Chakraborty, M. T. Rana and M. V. Salapaka

IECON 2022 – 48th Annual Conference of the IEEE Industrial Electronics Society, Brussels, Belgium

An End-to-End Cyber-Physical Infrastructure for Smart Grid Control and Monitoring

Dey, A., Chakraborty, S., Salapaka, M.V.

. In 2022 Innovative Smart Grid Technologies (ISGT). IEEE

Cargo-motor interaction kinetics regulate myosin VI-based transport.

R Shrivastava, S Sivaramakrishnan, MV Salapaka

Biophysical Journal, 2022

Change detection using an iterative algorithm with guarantees.

Rajaganapathy, Sivaraman, James Melbourne, and Murti V. Salapaka.

Automatica 136 (2022): 110075.

Confidence bounds for the Jarzynski estimator.

Rajaganapathy, Sivaraman, Cailong Hua, and Murti Salapaka.

In APS March Meeting Abstracts

Cyber-secured Microgrid Operation for Enhancing Resiliency Against False Data Injection,

A. Dey, S. Chakraborty, and M. V. Salapaka

in 2022 IEEE North American Power Symposium (NAPS), IEEE

DC-DistADMM :ADMM Algorithm for Constrained Optimization over Directed Graphs,

Distributed Finite-Time Termination for Consensus Algorithm in Switching Topologies,

G. Saraswat, V. Khatana, S. Patel and M. V. Salapaka

in IEEE Transactions on Network Science and Engineering

Efficient and passive learning of networked dynamical systems driven by non-white exogenous inputs.

Doddi, Harish, Deepjyoti Deka, Saurav Talukdar, and Murti Salapaka.

In International Conference on Artificial Intelligence and Statistics

Evaluation of Horizon of Viability Optimization Engine for Sustained Power to Critical Infrastructure,

V. Khatana, S. Chakraborty, G. Saraswat, B. Lundstorm and M. V. Salapaka

2022 IEEE Power and Energy Conference at Illinois (PECI), Champaign, IL, USA

Evaluation of Optimal Net Load Management in Microgrids Using Hardware-in-the-Loop Simulation,

J. Wang, S. Chakraborty, V. Khatana, B. Lundstrom, G. Saraswat and M. Salapaka

2022 IEEE Power & Energy Society Innovative Smart Grid Technologies Conference (ISGT), New Orleans, LA, USA

mu-Synthesis-Based Generalized Robust Framework for Grid-Following and Grid-Forming Inverters,

S. Chakraborty, S. Patel and M. V. Salapaka

in IEEE Transactions on Power Electronics

Multimodal regulation of myosin VI ensemble transport by cargo adaptor protein GIPC.

Rai, Ashim, Rachit Shrivastava, Duha Vang, Michael Ritt, Fredrik Sadler, Shreyas Bhaban, Murti Salapaka, and Sivaraj Sivaramakrishnan.

Journal of Biological Chemistry

Novel Power-Hardware-in-the-Loop Interface Method for Grid-Forming Inverter Systems,

S. Chakraborty et al.

IECON 2022 – 48th Annual Conference of the IEEE Industrial Electronics Society, Brussels, Belgium

Orientation of an Optically Trapped Non-Spherical Micro-Particle Using Iterative Learning Control

Edlund, C., Shrivastava, R., Salapaka, M.V., 2021.

. Proc. 2022 American Control Conference, Atlanta, GA.

The differential entropy of mixtures: New bounds and applications.

Melbourne, James, Sourav Talukdar, Shreyas Bhaban, Mokshay Madiman, and Murti Salapaka.

IEEE Transactions on Information Theory vol. 68

Tractable learning in under-excited power grids.

Deka, Deepjyoti, Doddi Harish, Sidhant Misra, and Murti V. Salapaka.

IEEE Transactions on Control of Network Systems

Design of H-infinity-based Robust Controller for Single-phase Grid-feeding Voltage Source Inverters,

S. Chakraborty, S. Patel and M. V. Salapaka

2020 52nd North American Power Symposium (NAPS)

Effects of Data Corruption in Network Identification using Directed Information

Venkat Ram Subramanian, Andrew Lamperski, Murti V Salapaka

IEEE Transactions on Automatic Control

Topology learning of linear dynamical systems with latent nodes using matrix decomposition.

Veedu, Mishfad, Doddi Harish, and Murti V. Salapaka.

IEEE Transactions on Automatic Control (2021), doi: 10.1109/TAC.2021.3124979.

D-DistADMM: A O(1/k) Distributed ADMM for Distributed Optimization in Directed Graph Topologies,

V. Khatana and M. V. Salapaka

2020 59th IEEE Conference on Decision and Control (CDC), Jeju Island, Korea (South)

Distributed Detection of Malicious Attacks on Consensus Algorithms with Applications in Power Networks,

S. Patel, V. Khatana, G. Saraswat and M. V. Salapaka

2020 7th International Conference on Control, Decision and Information Technologies (CoDIT), Prague, Czech Republic

Distribution Feeder-Scale Fast Frequency Response via Optimal Coordination of Net-load Resources Part I: Solution Design,

B. Lundstrom, S. Patel and M. V. Salapaka

in IEEE Transactions on Smart Grid, 21 October 2020, doi: 10.1109/TSG.2020.3032097.

Distribution Feeder-Scale Fast Frequency Response via Optimal Coordination of Net-load Resources Part II: Large-Scale Demonstration,

B. Lundstrom, S. Patel and M. V. Salapaka

in IEEE Transactions on Smart Grid, 21 October 2020, doi: 10.1109/TSG.2020.3032107

Gradient-Consensus Method for Distributed Optimization in Directed Multi-Agent Networks,

V. Khatana, G. Saraswat, S. Patel and M. V. Salapaka

2020 American Control Conference (ACC), Denver, CO, USA

Graphical models in meshed distribution grids: Topology estimation, change detection & limitations.

Deka, Deepjyoti, Saurav Talukdar, Michael Chertkov, and Murti V. Salapaka.

IEEE Transactions on Smart Grid 11

High-Frequency, Multiclass Nonintrusive Load Monitoring for Grid-Interactive Residential Buildings,

B. Lundstrom, G. Saraswat and M. V. Salapaka

2020 IEEE Power & Energy Society Innovative Smart Grid Technologies Conference (ISGT), Washington, DC, USA

Isochronous Architecture-Based Voltage-Active Power Droop for Multi-Inverter Systems,

S. Patel, S. Chakraborty, B. Lundstrom, S. Salapaka and M. V. Salapaka

in IEEE Transactions on Smart Grid, 16 November 2020, doi: 10.1109/TSG.2020.3037159.

Learning partially observed meshed distribution grids.

Doddi, Harish, Deepjyoti Deka, and Murti Salapaka.

In 2020 International Conference on Probabilistic Methods Applied to Power Systems (PMAPS)

On the Geometry of Consensus Algorithms with Application to Distributed Termination in Higher Dimension

Melbourne, J., Saraswat, G., Khatana, V., Patel, S., & Salapaka, M. V.

Selected to appear in IFAC

Optimal Power Hardware-in-the-Loop Interfacing: Applying Modern Control For Design and Verification of High-Accuracy Interfaces,

B. Lundstrom and M. Salapaka

in IEEE Transactions on Industrial Electronics, 29 October 2020, doi: 10.1109/TIE.2020.3032918

Physics informed topology learning in networks of linear dynamical systems.

Talukdar, Saurav, Deepjyoti Deka, Harish Doddi, Donatello Materassi, Michael Chertkov, and Murti V. Salapaka.

Automatica 112 (2020): 108705.

Robust and Optimal Single-loop Voltage Controller for Grid-forming Voltage Source Inverters,

S. Chakraborty, S. Patel and M. V. Salapaka

2020 IEEE Power and Energy Conference at Illinois (PECI), Champaign, IL, USA

Virtual Impedance Shaping for low voltage Microgrids,

S. Patel, S. Chakraborty, S. Roychowdhury and M. V. Salapaka

2020 IEEE Applied Power Electronics Conference and Exposition (APEC), New Orleans, LA, USA

A Semi-Analytical Model to Investigate Cargo Transport by Bi-Directional Molecular Motor Ensemble.

Shrivastava, Rachit, Shreyas Bhaban, James Melbourne, Sivaraman Rajaganapathy, and Murti Salapaka.

In APS Meeting Abstracts. 2019..

Corruption Detection in Networks of Bi-directional Dynamical Systems.

Subramanian, Venkat Ram, Andrew Lamperski, and Murti V. Salapaka.

In 2019 IEEE 58th Conference on Decision and Control (CDC)

Distinct mechanical properties in homologous spectrin-like repeats of utrophin.

Rajaganapathy, Sivaraman, Jackie L. McCourt, Sayan Ghosal, Angus Lindsay, Preston M. McCourt, Dawn A. Lowe, James M. Ervasti, and Murti V. Salapaka.

Scientific Reports 9

Distributed Stopping Criterion for Consensus in the Presence of Delays.

Prakash, Mangal, Saurav Talukdar, Sandeep Attree, Vikas Yadav, and Murti V. Salapaka.

IEEE Transactions on Control of Network Systems (2019).

Exact Topology Learning in a Network of Cyclostationary Processes.

Doddi, Harish, Saurav Talukdar, Deepjyoti Deka, and Murti Salapaka.

In 2019 American Control Conference (ACC)

Optimal Finite Time Erasure: A mass transport perspective.

Melbourne, James, Saurav Talukdar, Harish Doddi, and Murti Salapaka.

In APS Meeting Abstracts. 2019.

Relationships between certain f-divergences.

Melbourne, James, Mokshay Madiman, and Murti V. Salapaka.

In 2019 57th Annual Allerton Conference on Communication, Control, and Computing (Allerton)

Signal selection for estimation and identification in networks of dynamic systems: a graphical model approach.

Materassi, Donatello, and Murti V. Salapaka.

IEEE Transactions on Automatic Control 65

Stiffness of Cargo-Motor Linkage Tunes Myosin VI Motility and Response to Load

Shrivastava, Rachit; Rai, Ashim; Salapaka, Murti V.; Sivaramakrishnan, Sivaraj

Biochemistry 58, no. 47 (November 2019): 4721–4725.

Thermodynamics of Feedback with application to Landauer's Principle

Doddi, Harish, Saurav Talukdar, James Melbourne, and Murti Salapaka.

In American Physical Society March Meeting Abstracts. 2019.

Data-driven identification of a thermal network in multi-zone building.

Doddi, Harish, Saurav Talukdar, Deepjyoti Deka, and Murti Salapaka.

In IEEE Conference on Decision and Control (CDC)

Distributed Stopping Criterion for Ratio Consensus,

M. Prakash, S. Talukdar, S. Attree, S. Patel and M. V. Salapaka

2018 56th Annual Allerton Conference on Communication, Control, and Computing (Allerton), Monticello, IL, USA

Fast Primary Frequency Response using Coordinated DER and Flexible Loads: Framework and Residential-scale Demonstration,

B. Lundstrom, S. Patel, S. Attree and M. V. Salapaka

2018 IEEE Power & Energy Society General Meeting (PESGM), Portland, OR

Fidelity measurement on signal detection algorithms with application to AFM imaging

Ghosal, Sayan, Salapaka, Murti

IEEE Access, 6, (1)

Inferring Directed Graphs for Networks from Corrupt Data-Streams.

Subramanian, Venkat Ram, Andrew Lamperski, and Murti V. Salapaka.

In 2018 IEEE Conference on Decision and Control (CDC)

Learning and Estimation of Single Molecule Behavior.

Rajaganapathy, Sivaraman, James Melbourne, Tanuj Aggarwal, Rachit Shrivastava, and Murti V. Salapaka.

In 2018 Annual American Control Conference (ACC)

Mixed Entropy Power Inequalities and Log-Concavity of Equilibrium Distribution with application to the Physical Limits of Computation

J Melbourne, S Talukdar, S Bhaban, M Salapaka

Bulletin of the American Physical Society 2018

Mixture of Gaussians perspective on the Landauer Bound

S Talukdar, S Bhaban, J Melbourne, M Salapaka

Bulletin of the American Physical Society 2018

Model Detection Using Innovations Squared Mismatch Method: Application to Probe Based Data Storage System

S Ghosal, M Salapaka

Advances in Robotics and Automatic Control: Reviews

Note: Design of FPGA based system identification module with application to atomic force microscopy

Ghosal, Sayan, Pradhan, Sourav, Salapaka, Murti

Review of Scientific Instruments

Single Molecule Studies Enabled by Model-Based Controller Design.

Bhaban, Shreyas, Saurav Talukdar, Mingang Li, Thomas Hays, Peter Seiler, and Murti Salapaka.

IEEE/ASME Transactions on Mechatronics 23

Structure Learning in Network of Time Series,

Saurav Talukdar, Murti Salapaka

poster presentation at Baylearn, San Francisco

Topology Learning of Radial Dynamical Systems with Latent Nodes.

Talukdar, Saurav, Deepjyoti Deka, Michael Chertkov, and Murti Salapaka.

In 2018 Annual American Control Conference (ACC)

Transport Properties of Molecular Motor Ensemble with Bi-Directional Motors: A Computational Approach

Shrivastava, Rachit; Bhaban, Shreyas; Rajaganapathy, Sivaraman; Hays, Thomas; Salapaka, Murti V.

Molecular Biology of the Cell, ASCB Annual Meeting Abstracts (2018).

A Robust Scheme for Distributed Control of Power Converters in DC Microgrids with Time-Varying Power Sharing

Mayank Baranwal, Alireza Askarian, Srinivasa M. Salapaka, Murti V. Salapaka.

IEEE ACC 2017

Analysis of Intracellular Transport by Teams of Molecular Motors

S Bhaban, S Talukdar, D Materassi, M Li, T Hays, M Salapaka

APS March Meeting Abstracts 2017

Beating Landauer’s bound by Memory Erasure using Time Multiplexed Potentials.

Talukdar, Saurav, Shreyas Bhaban, and Murti Salapaka.

IFAC-PapersOnLine 50

Beating Landauer's Bound: Tradeoff between Accuracy and Heat Dissipation

S Talukdar, S Bhaban, M Salapaka

APS March Meeting Abstracts 2017

Distributed Apportioning in a Network of Energy Resources for providing Ancillary Services

Sourav Patel, Sandeep Attree, Saurav Talukdar, Mangal Prakash and Murti V. Salapaka

. International Conference on Smart Grid Communications (IEEE Smart Grid Comm), Germany, Oct 23-26

Exact topology reconstruction of radial dynamical systems with applications to distribution system of the power grid

Talukdar, Saurav, Deka, Deepjyoti, Materassi, Donatello, Salapaka, Murti V

American Control Conference (ACC)

Learning exact topology of a loopy power grid from ambient dynamics

Talukdar, S., Deka, D., Lundstrom, B., Chertkov, M., & Salapaka, M. V. (2017, May).

. In Proceedings of the Eighth International Conference on Future Energy Systems (pp. 222-227). ACM.

Memory erasure using time-multiplexed potentials

Talukdar, Saurav, Bhaban, Shreyas, Salapaka, Murti V

Physical Review E

Network topology identification from corrupt data streams.

Subramanian, Venkat Ram, Andrew Lamperski, and Murti V. Salapaka.

In Decision and Control (CDC)

Revisiting Kalman and Aizerman conjectures.

Naderi, Taher, Donatello Materassi, Giacomo Innocenti, Roberto Genesio, and Murti V. Salapaka.

In Decision and Control (CDC)

Topology estimation in bulk power grids: Guarantees on exact recovery

D Deka, S Talukdar, M Chertkov, M Salapaka

Bulk Power Systems Conference 2017

Toward quantitative estimation of material properties with dynamic mode atomic force microscopy: a comparative study

Ghosal, Sayan, Gannepalli, Anil, Salapaka, Murti V

Nanotechnology

Control on a molecular scale: A perspective.

Findeisen, Rolf, Martha A. Grover, Christian Wagner, Michael Maiworm, Ruslan Temirov, F. Stefan Tautz, Murti V. Salapaka, Srinivasa Salapaka, Richard D. Braatz, and SO Reza Moheimani.

In American Control Conference (ACC)

Fully observable networks with polytree structure

Donatello Materassi, Murti V. Salapaka*

2016 American Control Conference, pp: 4676 (tutorial paper: abstract)

Gleaning signals from noise for probing matter at the molecular scale

Murti V. Salapaka*, Srinivasa M. Salapaka

pp: 3092

Graphoid-based methodologies in modeling, analysis, identification and control of networks of dynamic systems.

Materassi, Donatello, and Murti V. Salapaka.

In American Control Conference (ACC)

Interrogating emergent transport properties for molecular motor ensembles: A semi-analytical approach.

Bhaban, Shreyas, Donatello Materassi, Mingang Li, Thomas Hays, and Murti Salapaka.

PLoS Computational Biol 12

Interrogating the Effect of Single Motor Mutations on Emergent Transport Properties for Molecular Motor Ensembles: An Exact Approach

Shreyas Bhaban, Donatello Materassi, Mingang Li, Thomas Hays and Murti Salapaka

American Society for Cell Biology (ASCB) Annual Meeting, Dec 3-7

Links between notions of separation in graphs and observable statistics in networks of dynamic systems.

Materassi, Donatello, and Murti V. Salapaka.

In American Control Conference (ACC)

Methods for network identification robust with respect to uncertainties in a topology

Donatello Materassi*, Murti V. Salapaka

pp:4680

Model detection with application to probe based data storage.

Ghosal, Sayan, Govind Saraswat, and Murti Salapaka.

Automatica 74 (2016): 171-182.

Noise Induced Transfer at Microscale Enabled by Optical Fields

Shreyas Bhaban, Saurav Talukdar and Murti Salapaka.

2016 American Control Conference (ACC), Boston, MA, July 6-8

Partially observable networks with polytree structure

2016. Donatello Materassi, Murti V. Salapaka*

American Control Conference, Boston

Reconstruction of Directed Acyclic Graphs and fundamental limitations.

Materassi, Donatello, and Murti V. Salapaka.

In American Control Conference (ACC)

Robust decentralized voltage control of dc-dc converters with applications to power sharing and ripple sharing.

Baranwal, Mayank, Srinivasa M. Salapaka, and Murti V. Salapaka.

In American Control Conference (ACC)

Single molecule force spectroscopy reveals contrasting mechanical behavior between actin-binding and dystroglycan binding halves of utrophin

Sayan Ghosal, Jackie McCourt, James Ervasti, and Murti Salapaka

Biophysical Society 60 th Annual Meeting

Steady state dynamics of molecular motors reveals load dependent cooperativity.

Talukdar, Saurav, Shreyas Bhaban, Donatello Materassi, and Murti Salapaka.

In Decision and Control (CDC)

Transport Properties of Molecular Motor Ensemble Affected by Single Motor Mutations

S. Bhaban, D. Materassi, M. Li, T. Hays and M. Salapaka

60th Annual Bio-physical Meeting, Feb 27 - March 2

An algorithmic approach for lessening conservativeness of criteria determining absolute stability.

Materassi, Donatello, and Murti V. Salapaka.

Control and Automation (MED)

Fidelity imaging for atomic force microscopy

Sayan Ghosal and Murti V. Salapaka

Applied Physics Letters, 106

High Bandwidth Optical Force Clamp for Investigation of Molecular Motors

On control of transport in Brownian ratchet mechanisms.

Roychowdhury, Subhrajit, Govind Saraswat, Srinivasa Salapaka, and Murti Salapaka.

Journal of Process Control 27 (2015): 76-86.

Notions of separation in graphs of dynamical systems

Materassi, Donatello; Salapaka, Murti V.

IFAC Proceedings Volumes 47, no. 3 (19th IFAC World Congress, Cape Town, August 2014): 2341–2346.

Preventing Cascading Failures in Microgrids with One-sided Support Vector Machines

M Wytock, S Salapaka, M. V. Salapaka

Control and Decision Conference, Los Angeles, CA

Viability and analysis of implementing only voltage-power droop for parallel inverter systems

S Salapaka, B Johnson, B Lundstrom, S Kim, S Collyer and Murti Salapaka

Control and Decision Conference, Los Angeles, CA, pp:3246-3251, December 15-17

AFM Imaging – Reliable or Not: Validation and Verification of Images in Atomic Force Microscopy

Salapaka, Srinivasa M.; Ramamoorthy, Aditya; Salapaka, Murti V.

IEEE Control Systems Magazine 33, no. 6 (2013): 106–118.

Design of a Constant Force Clamp and Estimation of Molecular Motor Motion using Modern Control Approach.

Subhrajit Roychowdhury, Shreyas Bhaban, Srinivasa Salapaka, Murti V. Salapaka

pp:1525-1530, American Control Conference

Error analysis for ML sequence detection in ISI channels with Gauss Markov Noise

Naveen Kumar, Aditya Ramamoorthy, Murti Salapaka

IEEE Transactions on Signal Processing

High bandwidth optical force clamp for investigation of molecular motor motion,

Subhrajit Roychowdhury, Tanuj Aggarwal, Srinivasa Salapaka, Murti V. Salapaka.

Applied Physics Letters

Model identification of a network as compressing sensing

Materassi, Donatello; Innocenti, Giacomo; Giarré, Laura; Salapaka, Murti V.

Systems & Control Letters 62, no. 8 (2013): 664–672.

Multimode and multitone analysis of the dynamic mode operation of the Atomic Force Microscope

Govind Saraswat, Pranav Agarwal, Murti V Salapaka

American Control Conference, pp:5506-5511

On contribution and detection of higher eigenmodes during dynamic atomic force microscopy.

Govind Saraswat, and Murti V. Salapaka.

Applied Physics Letters 102

Real-time Quantitative Determination of Dissipation and Elastic Properties of Material at the Nano-scale Using Dynamic Mode, Intermittent Contact Atomic Force Microscopy

Govind Saraswat, Greg Haugstad, Murti V. Salapaka

Meeting of the Materials Research Society, April

Reconstruction of directed acyclic networks of dynamical systems

Donatello Materassi, Murti V. Salapaka

American Control Conference (ACC)

Topography detection using innovations mismatch method for high speed and high density dynamic mode AFM

Sayan Ghosal, Govind Saraswat, Aditya Ramamoorty, Murti V. Salapaka

pp:5500-5505, American Control Conference

Maximizing Transport in Open Loop for Flashing Ratchets

Roychowdhury, Subhrajit; Salapaka, Srinivasa; Salapaka, Murti V.

American Control Conference (ACC) (2012): 3210–3215, Montréal, Canada. [Best Presentation Award]

Modeling and role of feedback controlled stochastic ratchets in cellular transport

Salapaka, Srinivasa; Roychowdhury, Subhrajit; Salapaka, Murti V.

IEEE 51st Annual Conference on Decision and Control (CDC) (2012): 374–379.

Network reconstruction of dynamical polytrees with unobserved nodes

Materassi, Donatello, Salapaka, Murti V

IEEE 51st Annual Conference on Decision and Control (CDC)

On the problem of reconstructing an unknown topology via locality properties of the Wiener filter

D. Materassi, M. V. Salapaka

IEEE Trans. Automatic Control, 57(7):1765-1777

A Generalized Zames-Falb Multiplier

D. Materassi, M. V. Salapaka

IEEE Trans. Automatic Control

Causal and non-causal filtering for network reconstruction,

Materassi, D.; Salapaka, M.V.;

American Control Conference (ACC)

Detection of Steps in Single Molecule Data

Aggarwal, Tanuj; Materassi, Donatello; Davison, Robert; Hays, Thomas; Salapaka, Murti V.

Cellular and Molecular Bioengineering 5, no. 1 (March 2012): 14–31.

Real-time nonlinear correction of back-focal-plane detection in optical tweezers

Tanuj Aggarwal, Murti V. Salapaka

Rev. Sci. Instrum. 81

Relations between structure and estimators in networks of dynamical systems,

Materassi, Donatello; Salapaka, Murti V.; Giarre, Laura;

Decision and Control and European Control Conference (CDC-ECC)

Robust control approach to force estimation in constant position optical tweezers

Tanuj Aggarwal, Hulas Sehgal, M. V. Salapaka

Review of Scientific Instruments

Architectures for Distributed Controller with Sub-controller Communication Uncertainty

V. Yadav, M.V. Salapaka, P. G. Voulgaris

IEEE Trans. Automatic Control

High-speed Nano-imaging using dynamic mode AFM: A MAP detection approach

Naveen Kumar, Govind Saraswat, Pranav Agarwal, Aditya Ramamoorthy and Murti V. Salapaka

44th Asilomar Conference on Signals, Systems and Computers

Immobilization method of yeast cells for intermittent contact mode imaging using atomic force microscope

T. De, A. M. Chettoor, S. Nettikadan and M. V. Salapaka

Ultramicroscopy

Maximum-Likelihood Sequence Detector for Dynamic Mode High Density Probe Storage

N. Kumar, P. Agarwal, A. Ramamoorthy and M. V. Salapaka

IEEE Transactions on Communications

On the problem of reconstructing an unknown topology

Donatello Materassi and Murti V. Salapaka

Proc. of American Control Conference

Performance evaluation of ML sequence detection in ISI channels with Gauss Markov Noise

Naveen Kumar, Aditya Ramamoorthy and Murti V. Salapaka

IEEE GlobeCom

Attraction Domain estimates combining Lyapunov Functions

Donatello Materassi and Murti V. Salapaka

Proc. of American Control Conference

Damping Mechanisms in Dynamic Mode Atomic Force Microscopy Applications

Makan Fardad, Mihailo R. Jovanovi´c, and Murti V. Salapaka

American Control Conference

Less conservative absolute stability criteria using Integral Quadratic Constraints

Donatello Materassi and Murti V. Salapaka

Proc. of American Control Conference

Real time estimation of equivalent cantilever parameters in tapping mode atomic force microscopy

P. Agarwal, M. V. Salapaka

Applied Physics Letters Vol. 95

Real time reduction of probe-loss using switching gain controller for high speed atomic force microscopy

P. Agarwal, T. De, M. V. Salapaka

Review of Scientific Instruments

Channel Modeling and Detector Design for Dynamic Mode High Density Probe Storage

Naveen Kumar, Pranav Agarwal, Aditya Ramamoorthy and Murti V. Salapaka

42nd Annual Conf. on Information Sciences and Systems (CISS)

Hysteresis Models of Dynamic Mode Atomic Force Microscopes: Analysis and Identification

M. Basso, D. Materassi, M. V. Salapaka

Nonlinear Dynamics

Modeling and identification of the dynamics of electrostatically actuated microcantilever with integrated thermal sensor,

Agarwal, P.; Sahoo, D.; Sebastian, A.; Pozidis, H.; Salapaka, M.V.

47th IEEE Conference on Decision and Control

Scanning Probe Microscopy – A Controls Systems Perspective on Nanointerrogation

Salapaka, Srinivasa M.; Salapaka, Murti V.

IEEE Control Systems Magazine 28, no. 2 (April 2008): 65–83.

Systems approach to identification of feedback enhanced optical tweezers

H. Sehgal, T. Aggarwal, M. V. Salapaka

Proceedings of SPIE

A Review of the Systems Approach to the Analysis of Dynamic-Mode Atomic Force Microscopy,

A. Sebastian, A. Gannepalli, A., M.V Salapaka.

IEEE Transactions on Control Systems Technology,

Characterization of Dual Beam Optical Tweezers System Using a Novel Detection Approach,

Sehgal, Hullas; Aggarwal, Tanuj; Salapaka, Murti

American Control Conference

Distributed protocol for determining when averaging consensus is reached.

Yadav, Vikas, and Murti V. Salapaka.

In 45th Annual Allerton Conf

Micro-manipulation using combined optical tweezers and atomic force microscope

Hullas Sehgal; Tathagata De; Saju Nettikadan; Murti V. Salapaka

Optical Trapping and Optical Micromanipulation IV. Edited by Dholakia, Kishan; Spalding, Gabriel C.. , Proceedings of the SPIE

Transient Force Atomic Force Microscopy: A New Nano-Interrogation Method

Deepak R. Sahoo, Pranav Agarwal and Murti V. Salapaka

Proceedings of the 2007 American Control Conference, New York City, USA, July 11-13

A less conservative circle criterion,

Materassi, D.; Salapaka, M.; Basso, M.

American Control Conference

Architectures for Distributed Control for Performance Optimization in Presence of Sub-controller Communication Noise

V. Yadav, P. G. Voulgaris, and M. V. Salapaka.

Proceedings of the IEEE Conference American Control Conference. pp. 626-631 Minneapolis, MN, USA June14-16

Construction and experimental implementation of a model-based inverse filter to attenuate hysteresis in ferroelectric transducers

A.G. Hatch, R.C. Smith, T. De, and M.V. Salapaka.

IEEE Transactions on Control Systems Technology. Volume 14, Issue 6, Nov. 2006 Page(s):1058 - 1069

Identification of Interaction Potentials in Dynamic Mode Atomic Force Microscopy,

Materassi, D.; Salapaka, M.V.; Basso, M.

Decision and Control

Model development for atomic force microscope stage mechanisms

R.C. Smith, A.G. Hatch, T. De, M.V. Salapaka, R.C.H. del Rosario, and J.K. Raye.

. SIAM Journal on Applied Mathematics 66(6)

Real-time detection of probe loss in atomic force microscopy

Tathagata De, Pranav Agarwal, Deepak R. Sahoo, and Murti V. Salapaka

Appl. Phys. Lett. 89

Distributed Architectures and Implementations of Observer Based Controllers for Performance Optimization

V. Yadav., P. Voulgaris, M. V. Salapaka

. Proceedings of the American Control Conference

Harmonic Bounds in Atomic Force Microscopy,

Materassi, D.; Salapaka, M.; Basso, M.

Decision and Control

Harnessing the transient signals in atomic force microscopy

D. R. Sahoo and A. Sebastian and M. V. Salapaka

International Journal of Robust and Nonlinear Control, Special Issue on Nanotechnology and Micro-biology

Observer based imaging methods for Atomic Force Microscopy,

Sahoo, D.R.; De Murti, T.; Salapaka, V.

Decision and Control

Systems approach based Q-control and imaging in atomic force microscopy

D. R. Sahoo, T. De, and M. V. Salapaka

Scanning Probe Microscopy, Sensors and Nanostructures, Cancun, Mexico, June 5-8

Thermally driven non-contact atomic force microscopy

Anil Gannepalli and Abu Sebastian and Jason Cleveland and Murti V. Salapaka

Applied Physics Letters, 87,(11)

Amplitude Phase Dynamics and Fixed Points in Tapping-Mode Atomic Force Microscopy

A. Sebastian, A. Gannepalli, M. V. Salapaka

pages: 2499-2504, Proceedings of the American Control Conference, Boston, Massachusetts, June 30 - July 2

Structured optimal and robust control with multiple criteria: A convex solution

Xin Qi, M. V. Salapaka, Petros G. Voulgaris and Mustafa Khammash

IEEE Trans. Automatic Control,49 (10) pp 1623-1640, October 2004.

Thermal Noise Response Based Control of Tip-Sample Separation in an Atomic Force Microscope

A. Gannepalli, A. Sebastian, J. Cleveland, M. V. Salapaka

Proceedings of the American Control Conference, Boston, Massachusetts, June 30 - July 2

An Observer Based Sample Detection Scheme for Atomic Force Microscopy

A. Sebastian, D. Sahoo, M. V. Salapaka

42nd IEEE Conference on Decision and Control

Stabilization of nested systems with uncertain subsystem communication channels

Yadav, V., P. Voulgaris, M. V. Salapaka

42nd IEEE Conference on Decision and Control

Structured optimal control with applications to network flow coordination

Xin, Qi, M. V. Salapaka, P. Voulgaris, M. Khammash

Accepted to American Control Conference

System tools applied to micro-cantilever based devices

A. Sebastian, S. Salapaka, M. V. Salapaka

Multidisciplinary Research in Control: The Mohammed Dahleh Symposium 2002. Eds. L. Giarre' and B. Bamieh, Lecture Notes in Control and Information Sciences N. 289, Springer-Verlag, Berlin

Transient Signal based sample-detection in Atomic Force Microscopy

D. Sahoo, A. Sebastian, M.V. Salapaka

Applied Physics Letters, 83(26)

A Practical Approach to Operating Survivable WDM Networks

M. Sridharan , M. V. Salapaka, A. Somani

Special Issue on WDM Based Network Architectures, IEEE Journal on Selected Areas in Communications on WDM-based Network Architectures. vol. 20

Analysis of Periodic Solutions in Tapping Mode AFM

Abu Sebastian, M. V. Salapaka

IEEE symposium on Mathematical Theory of Networks and Systems, University of Notredame, South Bend, Indiana, August 12

Design, Identification and Control of a Fast Nanopositioning Device

Salapaka, Srinivasa; Sebastian, Abu; Cleveland, J. P.; Salapaka, Murti V.

American Control Conference (ACC) 3 (May 2002): 1966–1971, Anchorage, Alaska.

Feedback Control theory for Real-time Scheduling

D. Sahoo, M. V. Salapaka, Al-Omari, R. Somani A. Manimaran, G.

American Control Conference, col.2

High Bandwidth Nano-positioner: A Robust Control Approach

S. Salapaka, A. Sebastian, J. P. Cleveland and M. V. Salapaka

Review of Scientific Instruments

Integrated Parameter and Control Design

Qi, Xin, M. Khammash, M. V. Salapaka

American Control Conference

Model development and inverse compensator design for high-speed nanopositioning

Smith, Ralph; Salapaka, Murti V.

41st IEEE Conference on Decision and Control (CDC), Las Vegas, Nevada (December 2002).

Transient Detection of Atomic Force Microscopy

D. Sahoo, A. Sebastian, M. V. Salapaka

Proceedings of the Allerton Conference, Urbana, Illinois, October

A Matlab Package for Multiobjective Control Synthesis

Qi, Xin; Khammash, Mustafa H.; Salapaka, Murti V.

Proceedings of the 40th IEEE Conference on Decision and Control (CDC), Orlando, Florida (December 2001): 3991–3996.

Approaches for Capacity and Revenue Optimization in Survivable WDM Networks

M. Sridharan, A. Somani, M. V. Salapaka

Spl. Issue on Survivable Optical Networks, Journal of High Speed Networks, August 2001. vol. 10

Constructive control for quantum mechanical systems

D. Sahoo, M. V. Salapaka

IEEE Conference on Control and Decision Conference

Harmonic and power balance tools for tapping-mode atomic force microscope

Sebastian, Abu; Salapaka, Murti V.; Chen, D. J.; Cleveland, J. P.

Journal of Applied Physics 89, no. 11 (June 2001): 6473–6480.

Optimal controller synthesis with multiple objectives

Qi, X., M. H. Khammash, and M. V. Salapaka

Proceedings of the 2001 American Control Conference, Arlington VA

A new approach to multiple-objective controller synthesis

Qi, X., M. H. Khammash, and M. V. Salapaka

Proceedings of the 38th annual allerton conference on communication, control and computing, Allerton, Urbana, Illinois

Experimental verification of stochastic resonance

R. Rajaram, M. V. Salapaka, M. Basso, M. Dahleh

Proceedings of the 2000 American Control Conference, Phoenix, Arizona

Linearity of amplitude and phase in tapping-mode atomic force microscopy

Dynamical analysis and control of micro-cantilevers

M. Ashhab, M. V. Salapaka, M. Dahleh, and I. Mezic

Automatica

Harmonic analysis based modeling of tapping mode AFM,

M. V. Salapaka, D. J. Chen, J. P. Cleveland

Proceedings of the 1999 American Control Conference, San Diego California.

Melnikov-based dynamical analysis of microcantilevers in scanning probe microscopy

M. Ashhab, M. V. Salapaka, M. Dahleh, and I. Mezic

Nonlinear Dynamics, 20: (3)

Piezoelectric Scanners for Atomic Force Microscopes: Design of Lateral Sensors, Identification and Control

A. Daniele, S. Salapaka, M.V. Salapaka, M. Dahleh

Proceedings of the American Control Conference, San Diego, California , June 1999

Robust Synthesis in l_1: A globally optimal Solution

M. Khammash, M.V. Salapaka, Tim Vanvoorhis

in the book “Robustness in Identification and Control, LNCIS, 245, Springer, New York 1999

Stochastic resonance in atomic force microscopes,

M. Basso, M. Dahleh, I. Mezic, M. V. Salapaka

Proceedings of the 1999 American Control Conference, San Diego California.

Complex dynamics in repeated impact oscillators,

S. Salapaka, M. V. Salapaka, M. Dahleh, I.Mezic

Proceedings of the 37th IEEE Conference on Decision and Control, Tampa, Florida, December 1998

Mimo optimal control design: the interplay of the H2 and the l1 norms

M. V. Salapaka, M. Dahleh, and P. Voulgaris

IEEE Transactions on Automatic Control

Multi-objective MIMO optimal control design without zero interpolation

M. V. Salapaka, M. Khammash

Proceedings of the 1998 American Control Conference, Philadelphia, Pennsylvania, June 1998

Recent progress in mixed objective control synthesis with l1 and H2 norms

M. V. Salapaka, M. Khammash, and M. Dahleh

Proceedings of the ASME conference

Stability and sensitivity analysis of periodic orbits in tapping mode atomic force microscopy,

M. V. Salapaka, D. J. Chen, J. P. Cleveland

Proceedings of the 37th IEEE Conference on Decision and Control, Tampa, Florida, December 1998

Synthesis of globally optimal controllers in l1 sing linear relaxation,

M. Khammash, M. V. Salapaka , T. Vanvoorhis

Proceedings of the 37th IEEE Conference on Decision and Control, Tampa, Florida, December 1998

Control of chaos in atomic force microscopes

M. Ashhab, M. V. Salapaka, M. Dahleh and I. Mezic.

Proceedings of the American Control Conference, Albuquerque, New Mexico June 1997.

l1/H2 control

M. V. Salapaka and M. Dahleh

Proceedings of the Allerton Conference, Urbana, Illinois

Multimode noise analysis of cantilevers for scanning probe microscopy

M. V. Salapaka, H. S. Bergh, J. Lai, A. Majumdar, and E. McFarland

Journal of Applied Physics, 81

Robust Identification and Control of Scanning Probe Microscope Scanner

SISO controller design to minimize a positive combination of the l1 and the H2 norms

M. V. Salapaka, P. Voulgaris, and M. Dahleh

Automatica

Solution of MIMO H2/l1 problem without zero interpolation

M. V. Salapaka, M. Khammash, and M. Dahleh

Proceedings of the 36th IEEE Conference on Decision and Control, San-Diego, CA

Controller design to optimize a composite performance measure

M. V. Salapaka, P. Voulgaris, and M. Dahleh

Journal of Optimization Theory and Applications

Nominal H2 performance and l1 robust performance,

M. V. Salapaka, M. Dahleh, A. Vicino, and A. Tesi

Proceedings of the IEEE Conference on Decision and Control. pp. 4034-4039, Kobe, Japan, December 1996.

Controllability of molecular systems

V. Ramakrishna, M. V. Salapaka, M. Dahleh, H. Rabitz, and A. Pierce

Physical Review A.

Controller design to minimize a composite measure of the l1 and the H2 norms

M. V. Salapaka, P. Voulgaris and M. Dahleh

Proceedings of the third Mediterranean Symposium on New Directions in Control and Automation”

Mixed objective control synthesis: optimal l1/H2 control

M. V. Salapaka, M. Dahleh and P. Voulgaris

Proceedings of the American Control Conference